J3_5LZF_003

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5LZF|1|A|U|686, 5LZF|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZF_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1938

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5LZF|1|A|U|683
5LZF|1|A|G|684
5LZF|1|A|A|685
5LZF|1|A|U|686
5LZF|1|A|C|687
5LZF|1|A|U|688
5LZF|1|A|A|689
*
5LZF|1|A|U|773
5LZF|1|A|G|774
5LZF|1|A|G|775
*
5LZF|1|A|C|791
5LZF|1|A|A|792
5LZF|1|A|A|793
5LZF|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2