J3_5LZF_006

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5LZF|1|A|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZF_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1216

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

5LZF|1|A|C|1306
5LZF|1|A|A|1307
5LZF|1|A|A|1308
5LZF|1|A|G|1309
*
5LZF|1|A|C|1605
5LZF|1|A|C|1606
5LZF|1|A|C|1607
5LZF|1|A|A|1608
5LZF|1|A|A|1609
5LZF|1|A|A|1610
5LZF|1|A|C|1611
*
5LZF|1|A|G|1620
5LZF|1|A|U|1621
5LZF|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34