J3_5LZS_025
3D structure
- PDB id
- 5LZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZS_025 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1061
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5LZS|1|9|C|1218
5LZS|1|9|C|1219
5LZS|1|9|A|1220
5LZS|1|9|G|1221
*
5LZS|1|9|C|1645
5LZS|1|9|C|1646
5LZS|1|9|A|1647
5LZS|1|9|G|1648
5LZS|1|9|U|1649
5LZS|1|9|A|1650
5LZS|1|9|A|1651
*
5LZS|1|9|U|1673
5LZS|1|9|G|1674
5LZS|1|9|A|1675
5LZS|1|9|U|1676
5LZS|1|9|U|1677
5LZS|1|9|A|1678
5LZS|1|9|A|1679
5LZS|1|9|G|1680
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain FF
- Uncharacterized protein
- Chain QQ
- uS9
- Chain cc
- eS28
Coloring options: