J3_5LZS_028

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

5LZS|1|9|G|1507, 5LZS|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZS_028 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1021

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5LZS|1|9|C|1272
5LZS|1|9|C|1273
5LZS|1|9|G|1274
5LZS|1|9|G|1275
5LZS|1|9|A|1276
5LZS|1|9|C|1277
*
5LZS|1|9|G|1320
5LZS|1|9|G|1321
5LZS|1|9|G|1322
5LZS|1|9|U|1323
5LZS|1|9|G|1324
*
5LZS|1|9|U|1504
5LZS|1|9|U|1505
5LZS|1|9|A|1506
5LZS|1|9|G|1507
5LZS|1|9|A|1508
5LZS|1|9|U|1509
5LZS|1|9|G|1510

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

eS10

Chain dd

uS14

Chain ff

eS31