J3_5LZT_008

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

5LZT|1|5|U|2788, 5LZT|1|5|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZT_008 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.2761

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5LZT|1|5|G|2402
5LZT|1|5|A|2403
5LZT|1|5|A|2404
5LZT|1|5|G|2405
*
5LZT|1|5|C|2785
5LZT|1|5|C|2786
5LZT|1|5|A|2787
5LZT|1|5|U|2788
5LZT|1|5|A|2789
5LZT|1|5|U|2790
5LZT|1|5|C|2791
*
5LZT|1|5|G|2800
5LZT|1|5|U|2801
5LZT|1|5|C|2802

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain g

eL34

Chain j

eL37

Chain l

eL39