J3_8C3A_007

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAA*UCAUAAC*GUC

Length

14 nucleotides

Bulged bases

8C3A|1|1|U|1836, 8C3A|1|1|A|1837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8C3A|1|1|G|1484
8C3A|1|1|A|1485
8C3A|1|1|A|1486
8C3A|1|1|A|1487
*
8C3A|1|1|U|1833
8C3A|1|1|C|1834
8C3A|1|1|A|1835
8C3A|1|1|U|1836
8C3A|1|1|A|1837
8C3A|1|1|A|1838
8C3A|1|1|C|1839
*
8C3A|1|1|G|1848
8C3A|1|1|U|1849
8C3A|1|1|C|1850

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain AH

60S ribosomal protein L34-B

Chain AK

60S ribosomal protein L37-B

Chain AM

60S ribosomal protein L39