3D structure

PDB id
5LZT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GGGG*CGCUUCUGGCGCCAAG*CGAC
Length
24 nucleotides
Bulged bases
5LZT|1|5|C|4116, 5LZT|1|5|U|4117, 5LZT|1|5|U|4118, 5LZT|1|5|C|4119, 5LZT|1|5|U|4120, 5LZT|1|5|G|4121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZT_013 not in the Motif Atlas
Homologous match to J3_8P9A_060
Geometric discrepancy: 0.2726
The information below is about J3_8P9A_060
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28639.1
Basepair signature
cWW-tSS-F-cWW-F-cWW-F
Number of instances in this motif group
2

Unit IDs

5LZT|1|5|G|4091
5LZT|1|5|G|4092
5LZT|1|5|G|4093
5LZT|1|5|G|4094
*
5LZT|1|5|C|4114
5LZT|1|5|G|4115
5LZT|1|5|C|4116
5LZT|1|5|U|4117
5LZT|1|5|U|4118
5LZT|1|5|C|4119
5LZT|1|5|U|4120
5LZT|1|5|G|4121
5LZT|1|5|G|4122
5LZT|1|5|C|4123
5LZT|1|5|G|4124
5LZT|1|5|C|4125
5LZT|1|5|C|4126
5LZT|1|5|A|4127
5LZT|1|5|A|4128
5LZT|1|5|G|4129
*
5LZT|1|5|C|4155
5LZT|1|5|G|4156
5LZT|1|5|A|4157
5LZT|1|5|C|4158

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain A
uL2
Chain G
eL8
Chain Z
eL27
Chain c
eL30
Chain g
eL34
Chain p
eL43

Coloring options:


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