J3_5LZV_008

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

5LZV|1|5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZV_008 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1043

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

5LZV|1|5|C|2393
5LZV|1|5|G|2394
5LZV|1|5|A|2395
5LZV|1|5|A|2396
5LZV|1|5|G|2397
5LZV|1|5|U|2398
5LZV|1|5|G|2399
*
5LZV|1|5|C|2805
5LZV|1|5|A|2806
5LZV|1|5|A|2807
*
5LZV|1|5|U|2819
5LZV|1|5|C|2820
5LZV|1|5|U|2821
5LZV|1|5|G|2822

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain g

eL34