J3_5LZV_016

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

5LZV|1|5|A|4464, 5LZV|1|5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZV_016 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.1255

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

5LZV|1|5|U|4463
5LZV|1|5|A|4464
5LZV|1|5|U|4465
5LZV|1|5|C|4466
*
5LZV|1|5|G|4491
5LZV|1|5|U|4492
5LZV|1|5|U|4493
*
5LZV|1|5|A|4507
5LZV|1|5|C|4508
5LZV|1|5|U|4509
5LZV|1|5|A|4510
5LZV|1|5|A|4511
5LZV|1|5|U|4512
5LZV|1|5|A|4513

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

uL14