J3_5LZV_022

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZV_022 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1988

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5LZV|1|9|A|816
5LZV|1|9|G|817
5LZV|1|9|A|818
5LZV|1|9|G|819
*
5LZV|1|9|C|829
5LZV|1|9|A|830
5LZV|1|9|G|831
*
5LZV|1|9|C|843
5LZV|1|9|U|844
5LZV|1|9|G|845
5LZV|1|9|G|846
5LZV|1|9|A|847
5LZV|1|9|U|848

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24