J3_5LZV_028

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

5LZV|1|9|G|1507, 5LZV|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZV_028 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.158

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5LZV|1|9|C|1272
5LZV|1|9|C|1273
5LZV|1|9|G|1274
5LZV|1|9|G|1275
5LZV|1|9|A|1276
5LZV|1|9|C|1277
*
5LZV|1|9|G|1320
5LZV|1|9|G|1321
5LZV|1|9|G|1322
5LZV|1|9|U|1323
5LZV|1|9|G|1324
*
5LZV|1|9|U|1504
5LZV|1|9|U|1505
5LZV|1|9|A|1506
5LZV|1|9|G|1507
5LZV|1|9|A|1508
5LZV|1|9|U|1509
5LZV|1|9|G|1510

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

eS10

Chain dd

uS14

Chain ff

eS31

Chain ii

eRF1(AAQ)