J3_5LZW_023

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZW_023 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2046

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5LZW|1|9|A|816
5LZW|1|9|G|817
5LZW|1|9|A|818
5LZW|1|9|G|819
*
5LZW|1|9|C|829
5LZW|1|9|A|830
5LZW|1|9|G|831
*
5LZW|1|9|C|843
5LZW|1|9|U|844
5LZW|1|9|G|845
5LZW|1|9|G|846
5LZW|1|9|A|847
5LZW|1|9|U|848

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24