J3_5LZW_028
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 5LZW|1|9|G|1256, 5LZW|1|9|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZW_028 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.094
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5LZW|1|9|C|1237
5LZW|1|9|U|1238
5LZW|1|9|U|1239
5LZW|1|9|A|1240
5LZW|1|9|A|1241
5LZW|1|9|U|1242
5LZW|1|9|U|1243
5LZW|1|9|U|1244
*
5LZW|1|9|G|1255
5LZW|1|9|G|1256
5LZW|1|9|G|1257
5LZW|1|9|A|1258
5LZW|1|9|A|1259
5LZW|1|9|A|1260
5LZW|1|9|C|1261
5LZW|1|9|C|1262
5LZW|1|9|U|1263
5LZW|1|9|C|1264
5LZW|1|9|A|1265
5LZW|1|9|C|1266
*
5LZW|1|9|G|1516
5LZW|1|9|G|1517
5LZW|1|9|C|1518
5LZW|1|9|U|1519
5LZW|1|9|G|1520
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain PP
- uS19
- Chain SS
- uS13
- Chain UU
- uS10
- Chain dd
- uS14
- Chain ii
- Pelota
Coloring options: