J3_5LZW_042
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- UAUC*GUUG*CACUAAUA
- Length
- 16 nucleotides
- Bulged bases
- 5LZW|1|5|A|4464, 5LZW|1|5|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZW_042 not in the Motif Atlas
- Geometric match to J3_4V9F_009
- Geometric discrepancy: 0.1812
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68010.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LZW|1|5|U|4463
5LZW|1|5|A|4464
5LZW|1|5|U|4465
5LZW|1|5|C|4466
*
5LZW|1|5|G|4491
5LZW|1|5|U|4492
5LZW|1|5|U|4493
5LZW|1|5|G|4494
*
5LZW|1|5|C|4506
5LZW|1|5|A|4507
5LZW|1|5|C|4508
5LZW|1|5|U|4509
5LZW|1|5|A|4510
5LZW|1|5|A|4511
5LZW|1|5|U|4512
5LZW|1|5|A|4513
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- uL3
- Chain O
- uL13
- Chain V
- uL14
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