3D structure

PDB id
5LZX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CUUAAUUU*GGGAAACCUCAC*GGCUG
Length
25 nucleotides
Bulged bases
5LZX|1|9|G|1256, 5LZX|1|9|A|1258
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZX_027 not in the Motif Atlas
Homologous match to J3_8P9A_078
Geometric discrepancy: 0.0929
The information below is about J3_8P9A_078
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5LZX|1|9|C|1237
5LZX|1|9|U|1238
5LZX|1|9|U|1239
5LZX|1|9|A|1240
5LZX|1|9|A|1241
5LZX|1|9|U|1242
5LZX|1|9|U|1243
5LZX|1|9|U|1244
*
5LZX|1|9|G|1255
5LZX|1|9|G|1256
5LZX|1|9|G|1257
5LZX|1|9|A|1258
5LZX|1|9|A|1259
5LZX|1|9|A|1260
5LZX|1|9|C|1261
5LZX|1|9|C|1262
5LZX|1|9|U|1263
5LZX|1|9|C|1264
5LZX|1|9|A|1265
5LZX|1|9|C|1266
*
5LZX|1|9|G|1516
5LZX|1|9|G|1517
5LZX|1|9|C|1518
5LZX|1|9|U|1519
5LZX|1|9|G|1520

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain PP
uS19
Chain SS
uS13
Chain UU
uS10
Chain dd
uS14
Chain ii
Protein pelota homolog

Coloring options:


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