J3_5LZX_028

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

5LZX|1|9|G|1507, 5LZX|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZX_028 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1542

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5LZX|1|9|C|1272
5LZX|1|9|C|1273
5LZX|1|9|G|1274
5LZX|1|9|G|1275
5LZX|1|9|A|1276
5LZX|1|9|C|1277
*
5LZX|1|9|G|1320
5LZX|1|9|G|1321
5LZX|1|9|G|1322
5LZX|1|9|U|1323
5LZX|1|9|G|1324
*
5LZX|1|9|U|1504
5LZX|1|9|U|1505
5LZX|1|9|A|1506
5LZX|1|9|G|1507
5LZX|1|9|A|1508
5LZX|1|9|U|1509
5LZX|1|9|G|1510

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

eS10

Chain dd

uS14

Chain ff

eS31