J3_5LZY_034
3D structure
- PDB id
- 5LZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.99 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 5LZY|1|5|U|354, 5LZY|1|5|A|362, 5LZY|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZY_034 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0649
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5LZY|1|5|C|351
5LZY|1|5|G|352
5LZY|1|5|A|353
5LZY|1|5|U|354
5LZY|1|5|A|355
5LZY|1|5|G|356
5LZY|1|5|U|357
5LZY|1|5|C|358
5LZY|1|5|A|359
5LZY|1|5|A|360
5LZY|1|5|C|361
5LZY|1|5|A|362
5LZY|1|5|A|363
5LZY|1|5|G|364
5LZY|1|5|U|365
5LZY|1|5|A|366
5LZY|1|5|C|367
*
5LZY|1|5|G|374
5LZY|1|5|G|375
5LZY|1|5|A|376
5LZY|1|5|A|377
5LZY|1|5|A|378
5LZY|1|5|G|379
*
5LZY|1|8|C|21
5LZY|1|8|U|22
5LZY|1|8|C|23
5LZY|1|8|G|24
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain Y
- uL24
- Chain j
- eL37
- Chain l
- eL39
Coloring options: