J3_5LZY_038

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GAU*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZY_038 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.2128

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

5LZY|1|5|G|1969
5LZY|1|5|A|1970
5LZY|1|5|U|1971
*
5LZY|1|5|G|1995
5LZY|1|5|C|1996
5LZY|1|5|U|1997
5LZY|1|5|A|1998
5LZY|1|5|A|1999
5LZY|1|5|G|2000
5LZY|1|5|G|2001
*
5LZY|1|5|C|2016
5LZY|1|5|A|2017
5LZY|1|5|C|2018

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain s

uL10

Chain t

uL11