J3_5LZZ_009

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

5LZZ|1|5|U|2788, 5LZZ|1|5|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZZ_009 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.2728

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5LZZ|1|5|G|2402
5LZZ|1|5|A|2403
5LZZ|1|5|A|2404
5LZZ|1|5|G|2405
*
5LZZ|1|5|C|2785
5LZZ|1|5|C|2786
5LZZ|1|5|A|2787
5LZZ|1|5|U|2788
5LZZ|1|5|A|2789
5LZZ|1|5|U|2790
5LZZ|1|5|C|2791
*
5LZZ|1|5|G|2800
5LZZ|1|5|U|2801
5LZZ|1|5|C|2802

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain g

eL34

Chain j

Ribosomal protein L37

Chain l

eL39