J3_5LZZ_016

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

5LZZ|1|5|A|4464, 5LZZ|1|5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZZ_016 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.1097

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

5LZZ|1|5|U|4463
5LZZ|1|5|A|4464
5LZZ|1|5|U|4465
5LZZ|1|5|C|4466
*
5LZZ|1|5|G|4491
5LZZ|1|5|U|4492
5LZZ|1|5|U|4493
*
5LZZ|1|5|A|4507
5LZZ|1|5|C|4508
5LZZ|1|5|U|4509
5LZZ|1|5|A|4510
5LZZ|1|5|A|4511
5LZZ|1|5|U|4512
5LZZ|1|5|A|4513

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

uL14