J3_5LZZ_022

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZZ_022 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2061

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5LZZ|1|9|A|816
5LZZ|1|9|G|817
5LZZ|1|9|A|818
5LZZ|1|9|G|819
*
5LZZ|1|9|C|829
5LZZ|1|9|A|830
5LZZ|1|9|G|831
*
5LZZ|1|9|C|843
5LZZ|1|9|U|844
5LZZ|1|9|G|845
5LZZ|1|9|G|846
5LZZ|1|9|A|847
5LZZ|1|9|U|848

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

40S ribosomal protein S24