3D structure

PDB id
5LZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.47 Å

Loop

Sequence
CCAG*CCAGUAA*UGAUUAAG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZZ_025 not in the Motif Atlas
Homologous match to J3_4V88_035
Geometric discrepancy: 0.1099
The information below is about J3_4V88_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.1
Basepair signature
cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

5LZZ|1|9|C|1218
5LZZ|1|9|C|1219
5LZZ|1|9|A|1220
5LZZ|1|9|G|1221
*
5LZZ|1|9|C|1645
5LZZ|1|9|C|1646
5LZZ|1|9|A|1647
5LZZ|1|9|G|1648
5LZZ|1|9|U|1649
5LZZ|1|9|A|1650
5LZZ|1|9|A|1651
*
5LZZ|1|9|U|1673
5LZZ|1|9|G|1674
5LZZ|1|9|A|1675
5LZZ|1|9|U|1676
5LZZ|1|9|U|1677
5LZZ|1|9|A|1678
5LZZ|1|9|A|1679
5LZZ|1|9|G|1680

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain 3
Transfer RNA; tRNA
Chain FF
uS7
Chain QQ
uS9
Chain cc
eS28

Coloring options:


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