J3_5M1J_001
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 5M1J|1|14|U|117, 5M1J|1|14|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5M1J_001 not in the Motif Atlas
- Geometric match to J3_8C3A_001
- Geometric discrepancy: 0.1144
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|14|C|113
5M1J|1|14|A|114
5M1J|1|14|A|115
5M1J|1|14|A|116
5M1J|1|14|U|117
5M1J|1|14|U|118
5M1J|1|14|U|119
5M1J|1|14|G|120
5M1J|1|14|A|121
5M1J|1|14|A|122
5M1J|1|14|A|123
*
5M1J|1|14|U|149
5M1J|1|14|A|150
5M1J|1|14|A|151
5M1J|1|14|U|152
5M1J|1|14|U|153
5M1J|1|14|U|154
5M1J|1|14|G|155
5M1J|1|14|G|156
5M1J|1|14|A|157
5M1J|1|14|G|158
*
5M1J|1|14|C|263
5M1J|1|14|G|264
5M1J|1|14|A|265
5M1J|1|14|A|266
5M1J|1|14|G|267
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain G5
- 60S ribosomal protein L8-A
- Chain L5
- 60S ribosomal protein L13-A
- Chain N5
- 60S ribosomal protein L15-A
- Chain h5
- 60S ribosomal protein L35-A
- Chain i5
- 60S ribosomal protein L36-A
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