J3_5M1J_003
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 5M1J|1|14|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5M1J_003 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1368
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|14|U|502
5M1J|1|14|C|503
*
5M1J|1|14|G|588
5M1J|1|14|A|589
5M1J|1|14|G|590
5M1J|1|14|G|591
5M1J|1|14|A|592
5M1J|1|14|C|593
5M1J|1|14|U|594
5M1J|1|14|G|595
5M1J|1|14|C|596
5M1J|1|14|G|597
*
5M1J|1|14|C|606
5M1J|1|14|A|607
5M1J|1|14|A|608
5M1J|1|14|G|609
5M1J|1|14|G|610
5M1J|1|14|A|611
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain C5
- 60S ribosomal protein L4-A
- Chain E5
- 60S ribosomal protein L6-A
- Chain F5
- 60S ribosomal protein L7-A
- Chain e5
- 60S ribosomal protein L32
Coloring options: