J3_5M1J_011

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

5M1J|1|14|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5M1J_011 not in the Motif Atlas

Geometric match to J3_5TBW_090

Geometric discrepancy: 0.1951

The information below is about J3_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5M1J|1|14|C|1631
5M1J|1|14|A|1632
*
5M1J|1|14|U|1641
5M1J|1|14|A|1642
5M1J|1|14|A|1643
5M1J|1|14|C|1644
5M1J|1|14|U|1645
*
5M1J|1|14|A|1810
5M1J|1|14|G|1811

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain Z5

60S ribosomal protein L27-A

Chain g5

60S ribosomal protein L34-A

Chain k5

60S ribosomal protein L38