J3_5M1J_017
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5M1J_017 not in the Motif Atlas
- Homologous match to J3_8C3A_082
- Geometric discrepancy: 0.123
- The information below is about J3_8C3A_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.2
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
5M1J|1|22|A|41
5M1J|1|22|G|42
*
5M1J|1|22|C|433
5M1J|1|22|G|434
5M1J|1|22|C|435
5M1J|1|22|A|436
5M1J|1|22|A|437
5M1J|1|22|A|438
5M1J|1|22|U|439
*
5M1J|1|22|A|464
5M1J|1|22|G|465
5M1J|1|22|U|466
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A1
- Protein DOM34
- Chain A6
- Protein HBS1
- Chain J2
- 40S ribosomal protein S9-A
- Chain X2
- 40S ribosomal protein S23-A
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