J3_5M1J_018
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 5M1J|1|22|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5M1J_018 not in the Motif Atlas
- Geometric match to J3_4V88_080
- Geometric discrepancy: 0.122
- The information below is about J3_4V88_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5M1J|1|22|U|633
5M1J|1|22|G|634
5M1J|1|22|A|635
*
5M1J|1|22|U|861
5M1J|1|22|A|862
5M1J|1|22|A|863
5M1J|1|22|U|864
5M1J|1|22|A|865
*
5M1J|1|22|U|965
5M1J|1|22|A|966
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain H2
- 40S ribosomal protein S7-A
- Chain L2
- 40S ribosomal protein S11-A
- Chain N2
- 40S ribosomal protein S13
- Chain W2
- 40S ribosomal protein S22-A
- Chain X2
- 40S ribosomal protein S23-A
- Chain b2
- 40S ribosomal protein S27-A
Coloring options: