J3_5M1J_026
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5M1J_026 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1859
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5M1J|1|22|U|1283
5M1J|1|22|C|1284
5M1J|1|22|U|1285
5M1J|1|22|U|1286
5M1J|1|22|A|1287
5M1J|1|22|G|1288
*
5M1J|1|22|C|1327
5M1J|1|22|G|1328
5M1J|1|22|A|1329
5M1J|1|22|G|1330
5M1J|1|22|A|1331
5M1J|1|22|C|1332
*
5M1J|1|22|G|1419
5M1J|1|22|C|1420
5M1J|1|22|A|1421
5M1J|1|22|A|1422
5M1J|1|22|U|1423
5M1J|1|22|A|1424
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain C2
- 40S ribosomal protein S2
- Chain D2
- 40S ribosomal protein S3
- Chain Q2
- 40S ribosomal protein S16-A
- Chain R2
- 40S ribosomal protein S17-B
- Chain U2
- 40S ribosomal protein S20
- Chain d2
- 40S ribosomal protein S29-A
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