J3_5M1J_034
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 5M1J|1|14|U|343, 5M1J|1|14|A|351, 5M1J|1|44|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5M1J_034 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0845
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5M1J|1|14|C|340
5M1J|1|14|G|341
5M1J|1|14|A|342
5M1J|1|14|U|343
5M1J|1|14|A|344
5M1J|1|14|G|345
5M1J|1|14|C|346
5M1J|1|14|G|347
5M1J|1|14|A|348
5M1J|1|14|A|349
5M1J|1|14|C|350
5M1J|1|14|A|351
5M1J|1|14|A|352
5M1J|1|14|G|353
5M1J|1|14|U|354
5M1J|1|14|A|355
5M1J|1|14|C|356
*
5M1J|1|14|G|363
5M1J|1|14|G|364
5M1J|1|14|A|365
5M1J|1|14|A|366
5M1J|1|14|A|367
5M1J|1|14|G|368
*
5M1J|1|44|C|21
5M1J|1|44|U|22
5M1J|1|44|U|23
5M1J|1|44|G|24
Current chains
- Chain 14
- 25S ribosomal RNA
- Chain 44
- 5.8S ribosomal RNA
Nearby chains
- Chain C5
- 60S ribosomal protein L4-A
- Chain Y5
- 60S ribosomal protein L26-A
- Chain j5
- 60S ribosomal protein L37-A
- Chain l5
- 60S ribosomal protein L39
Coloring options: