J3_5M1J_038
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCC*GCCACCAU
- Length
- 27 nucleotides
- Bulged bases
- 5M1J|1|14|C|1556, 5M1J|1|14|A|1558, 5M1J|1|14|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5M1J_038 not in the Motif Atlas
- Homologous match to J3_8P9A_056
- Geometric discrepancy: 0.1712
- The information below is about J3_8P9A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38098.1
- Basepair signature
- cWW-tSH-tWH-tWW-F-tHS-F-cWW-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5M1J|1|14|A|1537
5M1J|1|14|G|1538
5M1J|1|14|A|1539
5M1J|1|14|U|1540
5M1J|1|14|G|1541
5M1J|1|14|G|1542
*
5M1J|1|14|C|1551
5M1J|1|14|G|1552
5M1J|1|14|U|1553
5M1J|1|14|U|1554
5M1J|1|14|U|1555
5M1J|1|14|C|1556
5M1J|1|14|A|1557
5M1J|1|14|A|1558
5M1J|1|14|A|1559
5M1J|1|14|G|1560
5M1J|1|14|G|1561
5M1J|1|14|C|1562
5M1J|1|14|C|1563
*
5M1J|1|14|G|1577
5M1J|1|14|C|1578
5M1J|1|14|C|1579
5M1J|1|14|A|1580
5M1J|1|14|C|1581
5M1J|1|14|C|1582
5M1J|1|14|A|1583
5M1J|1|14|U|1584
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain 44
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A5
- 60S ribosomal protein L2-A
- Chain G5
- 60S ribosomal protein L8-A
- Chain N5
- 60S ribosomal protein L15-A
- Chain X5
- 60S ribosomal protein L25
- Chain j5
- 60S ribosomal protein L37-A
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