J3_5M1J_040

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5M1J_040 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1083

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5M1J|1|14|A|1654
5M1J|1|14|G|1655
5M1J|1|14|A|1656
5M1J|1|14|C|1657
5M1J|1|14|G|1658
*
5M1J|1|14|C|1791
5M1J|1|14|C|1792
*
5M1J|1|14|G|1796
5M1J|1|14|A|1797
5M1J|1|14|A|1798
5M1J|1|14|A|1799
5M1J|1|14|A|1800
5M1J|1|14|U|1801

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein L2-A

Chain g5

60S ribosomal protein L34-A

Chain p5

60S ribosomal protein L43-B