J3_5M1J_055

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

5M1J|1|14|A|2887, 5M1J|1|14|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5M1J_055 not in the Motif Atlas

Homologous match to J3_8CRE_023

Geometric discrepancy: 0.1385

The information below is about J3_8CRE_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_62630.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5M1J|1|14|U|2886
5M1J|1|14|A|2887
5M1J|1|14|U|2888
5M1J|1|14|C|2889
*
5M1J|1|14|G|2914
5M1J|1|14|U|2915
5M1J|1|14|U|2916
*
5M1J|1|14|A|2930
5M1J|1|14|C|2931
5M1J|1|14|U|2932
5M1J|1|14|A|2933
5M1J|1|14|A|2934
5M1J|1|14|U|2935
5M1J|1|14|A|2936

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain K5

60S ribosomal protein L16-A

Chain V5

60S ribosomal protein L23-A