J3_5M73_001

3D structure

PDB id

5M73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human SRP S domain with SRP72 RNA-binding domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UC*GCCUAAGG*CG

Length

12 nucleotides

Bulged bases

5M73|1|A|C|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11754.1

Basepair signature

cWW-F-cWW-F-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

5M73|1|A|U|128
5M73|1|A|C|129
*
5M73|1|A|G|168
5M73|1|A|C|169
5M73|1|A|C|170
5M73|1|A|U|171
5M73|1|A|A|172
5M73|1|A|A|173
5M73|1|A|G|174
5M73|1|A|G|175
*
5M73|1|A|C|221
5M73|1|A|G|222

Current chains

Chain A

Human gene for small cytoplasmic 7SL RNA (7L30.1)

Nearby chains

Chain C

Signal recognition particle subunit SRP68