Motif J3_11754.1 Version J3_11754.1 of this group appears in releases 3.33 to 3.46
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 1-11 | 2-6 | 7-8 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_6VMY_001 | 6VMY | 0.0000 | 0 | A | Cobalamin riboswitch | C | 237 | U | 238 | U | 239 | A | 240 | A | 241 | A | 242 | A | 243 | * | U | 311 | G | 312 | * | U | 213 | G | 214 | cWW | tWH | cWW | cWW |
| 2 | J3_5M73_001 | 5M73 | 0.3556 | 1 | A | SRP RNA | G | 168 | C | 170 | U | 171 | A | 172 | A | 173 | G | 174 | G | 175 | * | C | 221 | G | 222 | * | U | 128 | C | 129 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CUUAAAA*UG | 1 |
| UC*GCCUAAGG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *UUAAA* | 1 |
| *CCUAAG* | 1 |
Release history
| Release | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-F-F-cWW-F-F
- Heat map statistics
- Min 0.36 | Avg 0.18 | Max 0.36
Coloring options: