J3_5MC6_007
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 5MC6|1|2|G|1199, 5MC6|1|2|G|1201, 5MC6|1|2|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MC6_007 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.121
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5MC6|1|2|C|1180
5MC6|1|2|U|1181
5MC6|1|2|U|1182
5MC6|1|2|A|1183
5MC6|1|2|A|1184
5MC6|1|2|U|1185
5MC6|1|2|U|1186
5MC6|1|2|U|1187
*
5MC6|1|2|G|1198
5MC6|1|2|G|1199
5MC6|1|2|G|1200
5MC6|1|2|G|1201
5MC6|1|2|A|1202
5MC6|1|2|A|1203
5MC6|1|2|A|1204
5MC6|1|2|C|1205
5MC6|1|2|U|1206
5MC6|1|2|C|1207
5MC6|1|2|A|1208
5MC6|1|2|C|1209
*
5MC6|1|2|G|1454
5MC6|1|2|G|1455
5MC6|1|2|C|1456
5MC6|1|2|C|1457
5MC6|1|2|G|1458
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S15
- Chain H
- 40S ribosomal protein S18-A
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
- Chain m
- Transfer RNA; tRNA
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