J3_5MC6_010

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MC6_010 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1145

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5MC6|1|2|U|1293
5MC6|1|2|G|1294
*
5MC6|1|2|U|1303
5MC6|1|2|G|1304
5MC6|1|2|U|1305
5MC6|1|2|C|1306
*
5MC6|1|2|G|1318
5MC6|1|2|A|1319
5MC6|1|2|U|1320
5MC6|1|2|A|1321
5MC6|1|2|A|1322

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S17-B

Chain P

40S ribosomal protein S0-A

Chain R

40S ribosomal protein S2