J3_5MC6_013
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 5MC6|1|BQ|U|117, 5MC6|1|BQ|G|120, 5MC6|1|BQ|A|121, 5MC6|1|BQ|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MC6_013 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.113
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5MC6|1|BQ|C|113
5MC6|1|BQ|A|114
5MC6|1|BQ|A|115
5MC6|1|BQ|A|116
5MC6|1|BQ|U|117
5MC6|1|BQ|U|118
5MC6|1|BQ|U|119
5MC6|1|BQ|G|120
5MC6|1|BQ|A|121
5MC6|1|BQ|A|122
5MC6|1|BQ|A|123
*
5MC6|1|BQ|U|149
5MC6|1|BQ|A|150
5MC6|1|BQ|A|151
5MC6|1|BQ|U|152
5MC6|1|BQ|U|153
5MC6|1|BQ|U|154
5MC6|1|BQ|G|155
5MC6|1|BQ|G|156
5MC6|1|BQ|A|157
5MC6|1|BQ|G|158
*
5MC6|1|BQ|C|263
5MC6|1|BQ|G|264
5MC6|1|BQ|A|265
5MC6|1|BQ|A|266
5MC6|1|BQ|G|267
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AC
- 60S ribosomal protein L36-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain BP
- 60S ribosomal protein L35-A
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