J3_5MC6_015
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 5MC6|1|BQ|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MC6_015 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1165
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5MC6|1|BQ|U|502
5MC6|1|BQ|C|503
*
5MC6|1|BQ|G|588
5MC6|1|BQ|A|589
5MC6|1|BQ|G|590
5MC6|1|BQ|G|591
5MC6|1|BQ|A|592
5MC6|1|BQ|C|593
5MC6|1|BQ|U|594
5MC6|1|BQ|G|595
5MC6|1|BQ|C|596
5MC6|1|BQ|G|597
*
5MC6|1|BQ|C|606
5MC6|1|BQ|A|607
5MC6|1|BQ|A|608
5MC6|1|BQ|G|609
5MC6|1|BQ|G|610
5MC6|1|BQ|A|611
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain BE
- 60S ribosomal protein L4-A
- Chain BG
- 60S ribosomal protein L32
- Chain BM
- 60S ribosomal protein L6-A
- Chain BO
- 60S ribosomal protein L7-A
Coloring options: