J3_5MC6_019

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

5MC6|1|BQ|A|1259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MC6_019 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.5209

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

5MC6|1|BQ|G|1230
5MC6|1|BQ|A|1231
5MC6|1|BQ|C|1232
*
5MC6|1|BQ|G|1256
5MC6|1|BQ|C|1257
5MC6|1|BQ|U|1258
5MC6|1|BQ|A|1259
5MC6|1|BQ|A|1260
5MC6|1|BQ|G|1261
5MC6|1|BQ|G|1262
*
5MC6|1|BQ|C|1277
5MC6|1|BQ|A|1278
5MC6|1|BQ|C|1279

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains