J3_5MC6_033
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 5MC6|1|2|U|1390, 5MC6|1|2|U|1413, 5MC6|1|2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MC6_033 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.1228
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5MC6|1|2|A|1336
5MC6|1|2|A|1337
5MC6|1|2|C|1338
*
5MC6|1|2|G|1386
5MC6|1|2|G|1387
5MC6|1|2|A|1388
5MC6|1|2|C|1389
5MC6|1|2|U|1390
5MC6|1|2|A|1391
*
5MC6|1|2|U|1407
5MC6|1|2|G|1408
5MC6|1|2|G|1409
5MC6|1|2|A|1410
5MC6|1|2|A|1411
5MC6|1|2|G|1412
5MC6|1|2|U|1413
5MC6|1|2|U|1414
5MC6|1|2|U|1415
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S5
- Chain F
- 40S ribosomal protein S16-A
- Chain G
- 40S ribosomal protein S17-B
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
- Chain O
- Guanine nucleotide-binding protein subunit beta-like protein
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