J3_5MC6_036
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 5MC6|1|BQ|U|343, 5MC6|1|BQ|A|351, 5MC6|1|BS|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MC6_036 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.0879
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
5MC6|1|BQ|C|340
5MC6|1|BQ|G|341
5MC6|1|BQ|A|342
5MC6|1|BQ|U|343
5MC6|1|BQ|A|344
5MC6|1|BQ|G|345
5MC6|1|BQ|C|346
5MC6|1|BQ|G|347
5MC6|1|BQ|A|348
5MC6|1|BQ|A|349
5MC6|1|BQ|C|350
5MC6|1|BQ|A|351
5MC6|1|BQ|A|352
5MC6|1|BQ|G|353
5MC6|1|BQ|U|354
5MC6|1|BQ|A|355
5MC6|1|BQ|C|356
*
5MC6|1|BQ|G|363
5MC6|1|BQ|G|364
5MC6|1|BQ|A|365
5MC6|1|BQ|A|366
5MC6|1|BQ|A|367
5MC6|1|BQ|G|368
*
5MC6|1|BS|C|21
5MC6|1|BS|U|22
5MC6|1|BS|U|23
5MC6|1|BS|G|24
Current chains
- Chain BQ
- 25S ribosomal RNA
- Chain BS
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AK
- 60S ribosomal protein L26-A
- Chain AL
- 60S ribosomal protein L39
- Chain BE
- 60S ribosomal protein L4-A
Coloring options: