J3_5MDV_007
3D structure
- PDB id
- 5MDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 5MDV|1|1|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MDV_007 not in the Motif Atlas
- Homologous match to J3_7A0S_007
- Geometric discrepancy: 0.1168
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5MDV|1|1|C|1306
5MDV|1|1|A|1307
5MDV|1|1|A|1308
5MDV|1|1|G|1309
*
5MDV|1|1|C|1605
5MDV|1|1|C|1606
5MDV|1|1|C|1607
5MDV|1|1|A|1608
5MDV|1|1|A|1609
5MDV|1|1|A|1610
5MDV|1|1|C|1611
*
5MDV|1|1|G|1620
5MDV|1|1|U|1621
5MDV|1|1|G|1622
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L34
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