J3_5MDV_025

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5MDV|1|2|U|1240, 5MDV|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDV_025 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1124

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

5MDV|1|2|C|1237
5MDV|1|2|A|1238
5MDV|1|2|A|1239
5MDV|1|2|U|1240
5MDV|1|2|G|1241
*
5MDV|1|2|C|1296
5MDV|1|2|G|1297
5MDV|1|2|U|1298
5MDV|1|2|A|1299
5MDV|1|2|G|1300
5MDV|1|2|U|1301
5MDV|1|2|C|1302
5MDV|1|2|C|1303
*
5MDV|1|2|G|1334
5MDV|1|2|U|1335
5MDV|1|2|C|1336
5MDV|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13