J3_5MDY_017

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5MDY|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDY_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0789

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5MDY|1|2|C|826
5MDY|1|2|U|827
5MDY|1|2|U|828
5MDY|1|2|G|829
*
5MDY|1|2|C|857
5MDY|1|2|G|858
5MDY|1|2|G|859
5MDY|1|2|A|860
5MDY|1|2|G|861
*
5MDY|1|2|C|868
5MDY|1|2|G|869
5MDY|1|2|U|870
5MDY|1|2|U|871
5MDY|1|2|A|872
5MDY|1|2|A|873
5MDY|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21