J3_5MDY_031

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5MDY|1|2|C|48, 5MDY|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDY_031 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0729

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5MDY|1|2|G|46
5MDY|1|2|C|47
5MDY|1|2|C|48
5MDY|1|2|U|49
5MDY|1|2|A|50
5MDY|1|2|A|51
5MDY|1|2|C|52
*
5MDY|1|2|G|359
5MDY|1|2|G|360
5MDY|1|2|G|361
5MDY|1|2|G|362
5MDY|1|2|A|363
5MDY|1|2|A|364
5MDY|1|2|U|365
5MDY|1|2|A|366
5MDY|1|2|U|367
*
5MDY|1|2|A|393
5MDY|1|2|G|394
5MDY|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16