J3_5MDY_032
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 5MDY|1|2|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MDY_032 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.0836
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5MDY|1|2|C|586
5MDY|1|2|G|587
5MDY|1|2|G|588
*
5MDY|1|2|C|651
5MDY|1|2|U|652
5MDY|1|2|U|653
5MDY|1|2|G|654
5MDY|1|2|A|655
*
5MDY|1|2|U|751
5MDY|1|2|G|752
5MDY|1|2|A|753
5MDY|1|2|C|754
5MDY|1|2|G|755
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain m
- 30S ribosomal protein S8
- Chain q
- 30S ribosomal protein S12
- Chain t
- 30S ribosomal protein S15
- Chain v
- 30S ribosomal protein S17
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