J3_5MDZ_007

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5MDZ|1|1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDZ_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.111

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5MDZ|1|1|C|1306
5MDZ|1|1|A|1307
5MDZ|1|1|A|1308
5MDZ|1|1|G|1309
*
5MDZ|1|1|C|1605
5MDZ|1|1|C|1606
5MDZ|1|1|C|1607
5MDZ|1|1|A|1608
5MDZ|1|1|A|1609
5MDZ|1|1|A|1610
5MDZ|1|1|C|1611
*
5MDZ|1|1|G|1620
5MDZ|1|1|U|1621
5MDZ|1|1|G|1622

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34