J3_5MEI_077
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AUCAG*CUAACUACUG*CAUUU
- Length
- 20 nucleotides
- Bulged bases
- 5MEI|1|A|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MEI_077 not in the Motif Atlas
- Homologous match to J3_8C3A_036
- Geometric discrepancy: 0.0984
- The information below is about J3_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08408.1
- Basepair signature
- cWW-F-F-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5MEI|1|A|A|881
5MEI|1|A|U|882
5MEI|1|A|C|883
5MEI|1|A|A|884
5MEI|1|A|G|885
*
5MEI|1|A|C|927
5MEI|1|A|U|928
5MEI|1|A|A|929
5MEI|1|A|A|930
5MEI|1|A|C|931
5MEI|1|A|U|932
5MEI|1|A|A|933
5MEI|1|A|C|934
5MEI|1|A|U|935
5MEI|1|A|G|936
*
5MEI|1|A|C|943
5MEI|1|A|A|944
5MEI|1|A|U|945
5MEI|1|A|U|946
5MEI|1|A|U|947
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L43-A
- Chain C
- 40S ribosomal protein S1-A
- Chain O
- 40S ribosomal protein S13
- Chain P
- 40S ribosomal protein S14-B
- Chain b
- 40S ribosomal protein S26-B
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