J3_5MEI_084

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MEI_084 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0615

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

5MEI|1|AR|A|1654
5MEI|1|AR|G|1655
5MEI|1|AR|A|1656
5MEI|1|AR|C|1657
5MEI|1|AR|G|1658
*
5MEI|1|AR|C|1791
5MEI|1|AR|C|1792
*
5MEI|1|AR|G|1796
5MEI|1|AR|A|1797
5MEI|1|AR|A|1798
5MEI|1|AR|A|1799
5MEI|1|AR|A|1800
5MEI|1|AR|U|1801

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain DI

60S ribosomal protein L34-A

Chain DR

60S ribosomal protein L43-A