J3_5MEI_088
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 5MEI|1|AT|U|60, 5MEI|1|AT|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MEI_088 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0619
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
5MEI|1|AT|A|44
5MEI|1|AT|C|45
*
5MEI|1|AT|G|58
5MEI|1|AT|A|59
5MEI|1|AT|U|60
5MEI|1|AT|A|61
5MEI|1|AT|C|62
5MEI|1|AT|G|63
5MEI|1|AT|U|64
*
5MEI|1|AT|A|96
5MEI|1|AT|A|97
5MEI|1|AT|U|98
5MEI|1|AT|C|99
5MEI|1|AT|U|100
Current chains
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CZ
- 60S ribosomal protein L25
- Chain DJ
- 60S ribosomal protein L35-A
- Chain DL
- 60S ribosomal protein L37-A
- Chain DN
- 60S ribosomal protein L39
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